PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216714
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 176aa    MW: 20725.7 Da    PI: 10.0153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216714genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.2e-51261521128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    + pG+rFhPtdeelv +yL++kve+k+++l + ik+vdiyk++PwdLpk  ++++kewyfF++r +ky+++ r+nr+tksg+Wkatg dk+v+s  
  MDP0000216714  26 MLPGYRFHPTDEELVRFYLRRKVENKPIRL-DLIKHVDIYKYDPWDLPK--ASGDKEWYFFCRRGRKYRNSIRPNRVTKSGFWKATGIDKPVYSVg 118
                    579***************************.99***************4..35899**************************************85 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  MDP0000216714 119 dFHNCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152
                    55566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5422165IPR003441NAC domain
PROSITE profilePS5100550.22226176IPR003441NAC domain
PfamPF023651.0E-2628152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEEVDQKMMS ASDSNNMIYK DQDANMLPGY RFHPTDEELV RFYLRRKVEN KPIRLDLIKH  60
VDIYKYDPWD LPKASGDKEW YFFCRRGRKY RNSIRPNRVT KSGFWKATGI DKPVYSVGDF  120
HNCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPASSNTDT SIKNSTQEAV RLIHLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-462115210140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7944473e-32EU794447.1 Malus floribunda clone M18-6Bs Vf apple scab resistance protein HcrVf2-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350676.11e-126PREDICTED: transcription factor JUNGBRUNNEN 1-like, partial
RefseqXP_008359791.11e-124PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-77NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM5WLG32e-96M5WLG3_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11660.13e-83(Populus trichocarpa)
STRINGPOPTR_0002s05820.13e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-78NAC domain containing protein 42